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Dynamic re-definition of variable space during direct-space structure solution from powder X-ray diffraction data

Zhongfu Zhou ,  Kenneth Harris 

Cardiff University, School of Chemistry, Park Place, Cardiff CF103AT, United Kingdom

Abstract

Structure determination of organic molecular solids from powder X-ray diffraction data is nowadays carried out widely, in particular using the "direct-space" strategy for structure solution [1]. In our current implementation of this approach, the structure solution process involves exploring a powder-profile R-factor hypersurface to find the global minimum with respect to the set (Γ) of structural variables that define the trial structures. In principle, any technique for global optimization may be used, and our own current work in this field is focused on the use of a Genetic Algorithm (GA) [2] search algorithm, implemented in the program EAGER [3]. Conventionally, the structural variables in the set Γ comprise, for each molecule in the asymmetric unit, the position and orientation of the molecule with respect to the unit cell axes, and a set of variable torsion angles. Here we introduce an alternative approach, in which the standard set of structural variables is transformed to an alternative set of variables of the same or lower dimensionality, with this transformation carried out in a dynamic manner within the evolution of the GA calculation. Here we assess the feasibility of this approach in comparison with the standard approach. Structures containing highly flexible molecules defined by a significant number of torsional degrees of freedom represent a challenging case for direct-space structure solution [4], and our exploration of the potential advantages of altering the variable-space dynamically during GA structure solution calculations is focused in particular on examples of this type of structural problem.

[1] K.D.M. Harris, M. Tremayne, P. Lightfoot, P.G. Bruce, J. Am. Chem. Soc. 1994, 116, 3543.
[2] K.D.M. Harris, S. Habershon, E.Y. Cheung, R.L. Johnston, Z. Kristallogr. 2004, 219, 838.
[3] Z. Zhou, S. Habershon, G.W. Turner, B.M. Kariuki, E.Y. Cheung, A.J. Hanson, E. Tedesco, R.L. Johnston, K.D.M. Harris, EAGER, Cardiff University and University of Birmingham.
[4] A.J. Hanson, E.Y. Cheung, K.D.M. Harris, J. Phys. Chem. B 2007, 111, 6349.

 

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Related papers

Presentation: Oral at 11th European Powder Diffraction Conference, Microsymposium 3, by Zhongfu Zhou
See On-line Journal of 11th European Powder Diffraction Conference

Submitted: 2008-05-29 12:13
Revised:   2009-06-07 00:48